Stem-loop ssc-mir-153

Accession

MI0002454

Description

Sus scrofa ssc-mir-153 precursor miRNA

Literature search

6 open access papers mention ssc-mir-153
(6 sentences)

Sequence

6704 reads, 15.0 reads per million, 125 experiments

agcgguggccaguGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAucauuggaaacugug
.(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).

Structure

a     gg      -             GU       -a  aa 
 gcggu  ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuac AGUGAAAACACUG  ACGUUga  cg  u
g     aa      u             AU       cc  ag 

Annotation confidence Medium

Genome context

Unknown

Mature ssc-miR-153-5p

• Accession: MIMAT0052581
• Description: Sus scrofa ssc-miR-153-5p mature miRNA
• Sequence: 14 - GUCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: not_experimental

Mature ssc-miR-153-3p

• Accession: MIMAT0002160
• Description: Sus scrofa ssc-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGA - 72
• Evidence: not_experimental

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70