Stem-loop ssc-mir-29c

Accession

MI0002460

Description

Sus scrofa ssc-mir-29c precursor miRNA

Literature search

46 open access papers mention ssc-mir-29c
(95 sentences)

Sequence

1655448 reads, 845.0 reads per million, 212 experiments

aucucuuacacaggcUGACCGAUUUCUCCUGGUGUUcagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure

au        -  ggc           UCC       c   gucu 
  cucuuaca ca   UGACCGAUUUC   UGGUGUU aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 

Annotation confidence High

Genome context

chr9: 148552997-148553084 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-29c

Mature ssc-miR-29c-5p

• Accession: MIMAT0052586
• Description: Sus scrofa ssc-miR-29c-5p mature miRNA
• Sequence: 16 - UGACCGAUUUCUCCUGGUGUU - 36
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature ssc-miR-29c-3p

• Accession: MIMAT0002166
• Description: Sus scrofa ssc-miR-29c-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100