Accession
MI0002474
Description
Kaposi sarcoma-associated herpesvirus
kshv-mir-K12-11 precursor miRNA
Sequence
cgcuuuGGUCACAGCUUAAACAUUUCUAGGgcgguguuaugauccUUAAUGCUUAGCCUGUGUCCGAugcg
(((.((((.(((((.((((.((((...((((((......)).)))).)))).)))).))))).)))).)))
(((.((((.(((((.((((.((((...((((((......)).)))).)))).)))).))))).)))).)))
Structure
u U C A UCU - gu cgc uuGG CACAG UUAA CAUU AGGg cg g ||| |||| ||||| |||| |||| |||| || gcg AGCC GUGUC GAUU GUAA Uccu gu u u U C C --U a au
Annotation confidence
Low
Do you think this miRNA is real?
Comments
Samols et al. incorrectly named this sequence miR-6 [2]. Cai et al. define the likely miRNA primary transcripts in [3].
Genome context
KSU75698: 120576-120646 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from kshv-mir-K12-11
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
kshv-mir-K12-11 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature kshv-miR-K12-11-5p
| Accession | MIMAT0015213 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-11-5p mature miRNA |
| Sequence | 7 - GGUCACAGCUUAAACAUUUCUAGG - 30 |
| Evidence |
experimental
Illumina [5], SOLiD [6] |
Mature kshv-miR-K12-11-3p
| Accession | MIMAT0002181 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-11-3p mature miRNA |
| Sequence | 46 - UUAAUGCUUAGCCUGUGUCCGA - 67 |
| Evidence |
experimental
cloned [1-2,4], Illumina [5], SOLiD [6] |
References
|
