Accession
MI0002476
Description
Kaposi sarcoma-associated herpesvirus
kshv-miR-K12-2 precursor miRNA
Sequence
gggucuacuucgcuAACUGUAGUCCGGGUCGAUCUGagccauugaagcaagcuuccaGAUCUUCCAGGGCUAGAGCUGccgcggugacacc
(((((.(((.((.((.((.((((((.((..(((((((((...........)))..))))))..)).)))))).)).)).)).)))))).))
(((((.(((.((.((.((.((((((.((..(((((((((...........)))..))))))..)).)))))).)).)).)).)))))).))
Structure
- u u c A G G UC -- cauu gg guc acu cg uA CU UAGUCC GG GAUCUG agc g || ||| ||| || || || |||||| || |||||| ||| a cc cag ugg gc GU GA AUCGGG CC CUAGac ucg a a - c c C G A UU cu aacg
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Cai et al. define the likely miRNA primary transcripts in [2].
Genome context
KSU75698: 121674-121764 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from kshv-miR-K12-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature kshv-miR-K12-2-5p
| Accession | MIMAT0002183 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-2-5p mature miRNA |
| Sequence | 15 - AACUGUAGUCCGGGUCGAUCUG - 36 |
| Evidence |
experimental
cloned [1], Illumina [3], SOLiD [4] |
Mature kshv-miR-K12-2-3p
| Accession | MIMAT0015215 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-2-3p mature miRNA |
| Sequence | 58 - GAUCUUCCAGGGCUAGAGCUG - 78 |
| Evidence |
experimental
Illumina [3], SOLiD [4] |
References
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