Stem-loop ggo-mir-15b

Accession

MI0002491

Description

Gorilla gorilla ggo-mir-15b precursor miRNA

Literature search

3 open access papers mention ggo-mir-15b
(3 sentences)

Sequence

1192 reads, 88.0 reads per million, 4 experiments

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAugcuacagucaagaugCGAAUCAUUAUUUGCUGCUCUAgaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure

u    --g       gua   U       C  C       A   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gAU UCGUCGU UA UACUAAG gua ga  u
u    aaa       aaa   C       U  U       C   -  ac 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 162984222-162984319 [+]

Mature ggo-miR-15b-5p

• Accession: MIMAT0002202
• Description: Gorilla gorilla ggo-miR-15b-5p mature miRNA
• Sequence: 20 - UAGCAGCACAUCAUGGUUUACA - 41
• Evidence: not_experimental

Mature ggo-miR-15b-3p

• Accession: MIMAT0061236
• Description: Gorilla gorilla ggo-miR-15b-3p mature miRNA
• Sequence: 58 - CGAAUCAUUAUUUGCUGCUCUA - 79
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24