Stem-loop ptr-mir-15b

Accession

MI0002495

Description

Pan troglodytes ptr-mir-15b precursor miRNA

Literature search

5 open access papers mention ptr-mir-15b
(13 sentences)

Sequence

6779 reads, 137.0 reads per million, 24 experiments

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAUgcuacagucaagaugCGAAUCAUUAUUUGCUGCUCUagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure

u    --g       gua   U       C  C       A   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAU cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gaU UCGUCGU UA UACUAAG gua ga  u
u    aaa       aaa   C       U  U       C   -  ac 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 164010544-164010641 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-15b

Mature ptr-miR-15b-5p

• Accession: MIMAT0002206
• Description: Pan troglodytes ptr-miR-15b-5p mature miRNA
• Sequence: 20 - UAGCAGCACAUCAUGGUUUACAU - 42
• Evidence: not_experimental

Mature ptr-miR-15b-3p

• Accession: MIMAT0052186
• Description: Pan troglodytes ptr-miR-15b-3p mature miRNA
• Sequence: 58 - CGAAUCAUUAUUUGCUGCUCU - 78
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24