Stem-loop ptr-mir-15b

Accession

MI0002495

Description

Pan troglodytes ptr-mir-15b precursor miRNA

Literature search

1 open access papers mention ptr-mir-15b
(1 sentences)

Sequence

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAugcuacagucaagaugcgaaucauuauuugcugcucuagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure

u    --g       gua   U       C  C       A   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaag gua ga  u
u    aaa       aaa   c       u  u       c   -  ac 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 164010544-164010641 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-15b

Mature ptr-miR-15b

• Accession: MIMAT0002206
• Description: Pan troglodytes ptr-miR-15b mature miRNA
• Sequence: 20 - UAGCAGCACAUCAUGGUUUACA - 41
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24