miRBase entry: ppa-mir-30b

Stem-loop ppa-mir-30b

Accession

MI0002508

Description

Pan paniscus ppa-mir-30b precursor miRNA

Sequence

accaaguuucaguucaUGUAAACAUCCUACACUCAGCuguaauacauggauuggcugggagguggauguuuacuucagcugacuugga
.(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).

Structure

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 134424477-134424564 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-30b

Accession	MIMAT0002219
Description	Pan paniscus ppa-miR-30b mature miRNA
Sequence	17 - UGUAAACAUCCUACACUCAGC - 37
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24