Stem-loop ptr-mir-128a

Accession

MI0002519

Description

Pan troglodytes ptr-mir-128a precursor miRNA

Sequence

462682 reads, 3433.0 reads per million, 24 experiments

ugagcuguuggauuCGGGGCCGUAGCACUGUCUGAgagguuuacauuucUCACAGUGAACCGGUCUCUUUUucagcugcuuc
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).

Structure

u    u      uuC       UAG      CU       u 
 gagc guugga   GGGGCCG   CACUGU  GAgaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2B: 25305331-25305412 [+]

Mature ptr-miR-128a-5p

• Accession: MIMAT0052191
• Description: Pan troglodytes ptr-miR-128a-5p mature miRNA
• Sequence: 15 - CGGGGCCGUAGCACUGUCUGA - 35
• Evidence: not_experimental

Mature ptr-miR-128a-3p

• Accession: MIMAT0002230
• Description: Pan troglodytes ptr-miR-128a-3p mature miRNA
• Sequence: 50 - UCACAGUGAACCGGUCUCUUUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24