Stem-loop mml-mir-130a

Accession

MI0002524

Description

Macaca mulatta mml-mir-130a precursor miRNA

Sequence

43138 reads, 351 reads per million, 9 experiments

ugcugcuggccagaGCUCUUUUCACAUUGUGCUACUgucugcaccugucacuagCAGUGCAAUGUUAAAAGGGCauuggcc
.......((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).))))))

Structure

ugcugcu      a        C          A   ucu  a 
       ggccag GCUCUUUU ACAUUGUGCU CUg   gc c
       |||||| |||||||| |||||||||| |||   ||  
       ccgguu CGGGAAAA UGUAACGUGA gau   ug c
-------      a        U          C   cac  u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 15997927-15998007 [-]

Mature mml-miR-130a-3p

• Accession: MIMAT0002235
• Description: Macaca mulatta mml-miR-130a-3p mature miRNA
• Sequence: 55 - CAGUGCAAUGUUAAAAGGGC - 74
• Evidence: experimental ; Illumina [2]

Mature mml-miR-130a-5p

• Accession: MIMAT0026566
• Description: Macaca mulatta mml-miR-130a-5p mature miRNA
• Sequence: 15 - GCUCUUUUCACAUUGUGCUACU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45