Stem-loop ppa-mir-130a

Accession

MI0002527

Description

Pan paniscus ppa-mir-130a precursor miRNA

Sequence

ugcugcuggccagagcucuuuucacauugugcuacugucugcaccugucacuagCAGUGCAAUGUUAAAAGGGCauuggccguguagug
.((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).))))))).))))).

Structure

u     -       a        c          a   ucu  a 
 gcugc uggccag gcucuuuu acauugugcu cug   gc c
 ||||| ||||||| |||||||| |||||||||| |||   ||  
 ugaug gccgguu CGGGAAAA UGUAACGUGA gau   ug c
g     u       a        U          C   cac  u 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr11: 56352930-56353018 [+]

Mature ppa-miR-130a

• Accession: MIMAT0002238
• Description: Pan paniscus ppa-miR-130a mature miRNA
• Sequence: 55 - CAGUGCAAUGUUAAAAGGGC - 74
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24