Stem-loop ptr-mir-135a-2

Accession

MI0002541

Description

Pan troglodytes ptr-mir-135a-2 precursor miRNA

Sequence

6147 reads, 52.0 reads per million, 22 experiments

agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaauca
.(((...(((((....(((.((((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))).)))...)))))..))).

Structure

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau AAGUACCGAAGG UAGGGAUGUacu u a a
a   -aa     -uua   a            -            c g a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr12: 100343835-100343934 [+]

Mature ptr-miR-135a-5p

• Accession: MIMAT0002252
• Description: Pan troglodytes ptr-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: not_experimental

Mature ptr-miR-135a-2-3p

• Accession: MIMAT0052194
• Description: Pan troglodytes ptr-miR-135a-2-3p mature miRNA
• Sequence: 62 - UGUAGGGAUGGAAGCCAUGAA - 82
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24