Stem-loop ptr-mir-140

Accession

MI0002547

Description

Pan troglodytes ptr-mir-140 precursor miRNA

Literature search

2 open access papers mention ptr-mir-140
(4 sentences)

Sequence

971021 reads, 11069.0 reads per million, 24 experiments

ugugucucucucuguguccugcCAGUGGUUUUACCCUAUGGUAgguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcaggauaccggggcacc
.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))).

Structure

u       ucucu        -  A             A       u  c  c 
 gugucuc     guguccug cC GUGGUUUUACCCU UGGUAgg ua gu  
 |||||||     |||||||| || ||||||||||||| ||||||| || || a
 cacgggg     cauaggac GG CACCAAGAUGGGA ACCAucu gu cg  
c       ----c        A  -             C       u  -  u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr16: 60894808-60894907 [+]

Mature ptr-miR-140-5p

• Accession: MIMAT0002255
• Description: Pan troglodytes ptr-miR-140-5p mature miRNA
• Sequence: 23 - CAGUGGUUUUACCCUAUGGUA - 43
• Evidence: not_experimental

Mature ptr-miR-140-3p

• Accession: MIMAT0052196
• Description: Pan troglodytes ptr-miR-140-3p mature miRNA
• Sequence: 63 - ACCACAGGGUAGAACCACGGA - 83
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24