Stem-loop ptr-mir-143

Accession

MI0002549

Description

Pan troglodytes ptr-mir-143 precursor miRNA

Literature search

10 open access papers mention ptr-mir-143
(20 sentences)

Sequence

213126 reads, 2371.0 reads per million, 24 experiments

gcgcagcgcccugucucccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCaggaagagagaaguuuuucugcagc
((((((.......((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).)))).......)))).))

Structure

  -    cgcccug    c ag      G         G      U  -  ag 
gc gcag       ucuc c  ccugaG UGCAGUGCU CAUCUC GG uc  u
|| ||||       |||| |  |||||| ||||||||| |||||| || ||   
cg cguc       agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
  a    uuuuuga    a aa      G         A      U  g  gg 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 149628986-149629091 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-143

Mature ptr-miR-143-5p

• Accession: MIMAT0052197
• Description: Pan troglodytes ptr-miR-143-5p mature miRNA
• Sequence: 27 - GGUGCAGUGCUGCAUCUCUGG - 47
• Evidence: not_experimental

Mature ptr-miR-143-3p

• Accession: MIMAT0002257
• Description: Pan troglodytes ptr-miR-143-3p mature miRNA
• Sequence: 61 - UGAGAUGAAGCACUGUAGCUC - 81
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24