Stem-loop ppy-mir-143

Accession

MI0002551

Description

Pongo pygmaeus ppy-mir-143 precursor miRNA

Sequence

gcgcagcgcccugucucccagccugaggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUCAggaagagagaaguuguucugcagc
((((((.((....((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).))))....)).)))).))

Structure

  -    c  ccug    c ag      g         g      u  -  ag 
gc gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
|| |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
cg cguc ug    agag g  ggACUC AUGUCACGA GUAGAG cu ag  u
  a    u  uuga    a aa      G         A      U  g  gg 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 151351266-151351371 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-143

Mature ppy-miR-143

• Accession: MIMAT0002259
• Description: Pongo pygmaeus ppy-miR-143 mature miRNA
• Sequence: 61 - UGAGAUGAAGCACUGUAGCUCA - 82
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24