Stem-loop ptr-mir-144

Accession

MI0002554

Description

Pan troglodytes ptr-mir-144 precursor miRNA

Literature search

5 open access papers mention ptr-mir-144
(8 sentences)

Sequence

10392 reads, 88.0 reads per million, 24 experiments

uggggcccuggcugGGAUAUCAUCAUAUACUGUAAGUUugcgaugagacacUACAGUAUAGAUGAUGUACUAguccgggcacccuc
.(((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)))..

Structure

-u   -    u      G        A         -A    gc 
  ggg gccc ggcugG AUAUCAUC UAUACUGUA  GUUu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cugAUC UGUAGUAG AUAUGACAU  caga  a
cu   a    c      A        -         ca    gu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr17: 28309472-28309557 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-144

Mature ptr-miR-144-5p

• Accession: MIMAT0052198
• Description: Pan troglodytes ptr-miR-144-5p mature miRNA
• Sequence: 15 - GGAUAUCAUCAUAUACUGUAAGUU - 38
• Evidence: not_experimental

Mature ptr-miR-144-3p

• Accession: MIMAT0002262
• Description: Pan troglodytes ptr-miR-144-3p mature miRNA
• Sequence: 52 - UACAGUAUAGAUGAUGUACUA - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24