Stem-loop ptr-mir-145

Accession

MI0002559

Description

Pan troglodytes ptr-mir-145 precursor miRNA

Literature search

12 open access papers mention ptr-mir-145
(30 sentences)

Sequence

11457 reads, 195.0 reads per million, 24 experiments

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUUagaugcuaagauggggAUUCCUGGAAAUACUGUUCUUgaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure

c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagU UC  GUCA AA GGUCCUUAgggg     u
u   u  u     -  UU    U  A            uagaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 149630713-149630800 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-145

Mature ptr-miR-145-5p

• Accession: MIMAT0002267
• Description: Pan troglodytes ptr-miR-145-5p mature miRNA
• Sequence: 16 - GUCCAGUUUUCCCAGGAAUCCCUU - 39
• Evidence: not_experimental

Mature ptr-miR-145-3p

• Accession: MIMAT0052199
• Description: Pan troglodytes ptr-miR-145-3p mature miRNA
• Sequence: 56 - AUUCCUGGAAAUACUGUUCUU - 76
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24