miRBase entry: ggo-mir-145

Stem-loop ggo-mir-145

Accession

MI0002560

Description

Gorilla gorilla ggo-mir-145 precursor miRNA

Literature search

4 open access papers mention ggo-mir-145
(6 sentences)

Sequence

4715 reads, 301.0 reads per million, 4 experiments

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggAUUCCUGGAAAUACUGUUCUUgaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure

c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagU UC  GUCA AA GGUCCUUAgggg     u
u   u  u     -  UU    U  A            uagaa

Annotation confidence High

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 133117057-133117144 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-145-5p

Accession	MIMAT0002268
Description	Gorilla gorilla ggo-miR-145-5p mature miRNA
Sequence	16 - GUCCAGUUUUCCCAGGAAUCCCU - 38
Evidence	not_experimental

Mature ggo-miR-145-3p

Accession	MIMAT0061243
Description	Gorilla gorilla ggo-miR-145-3p mature miRNA
Sequence	56 - AUUCCUGGAAAUACUGUUCUU - 76
Evidence	experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24