Stem-loop ggo-mir-125b-2

Accession

MI0002574

Description

Gorilla gorilla ggo-mir-125b-2 precursor miRNA

Literature search

3 open access papers mention ggo-mir-125b-2
(10 sentences)

Sequence

14045 reads, 1158.0 reads per million, 4 experiments

accagacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucACAAGUCAGGCUCUUGGGACCUaggcggagggga
.((...((((.(((((((((.((((.(((.((((((((.((.........)).)))))))).))).)))))))).))))).)))).)).

Structure

a  aga    u     -    U    C   A        g  auu 
 cc   cuuu ccuag UCCC GAGA CCU ACUUGUGA gu   u
 ||   |||| ||||| |||| |||| ||| |||||||| ||   u
 gg   gagg ggaUC AGGG UUCU GGA UGAACAcu ca   a
a  --g    c     C    -    C   C        a  aug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr21: 7639451-7639539 [+]

Mature ggo-miR-125b-5p

• Accession: MIMAT0002220
• Description: Gorilla gorilla ggo-miR-125b-5p mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: not_experimental

Mature ggo-miR-125b-2-3p

• Accession: MIMAT0061239
• Description: Gorilla gorilla ggo-miR-125b-2-3p mature miRNA
• Sequence: 56 - ACAAGUCAGGCUCUUGGGACCU - 77
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24