Stem-loop ppy-mir-125b-2

Accession

MI0002577

Description

Pongo pygmaeus ppy-mir-125b-2 precursor miRNA

Sequence

accagacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucacaagucaggcucuugggaccuaggcggagggga
.((...((((.(((((((((.((((.(((.((((((((.((.........)).)))))))).))).)))))))).))))).)))).)).

Structure

a  aga    u     -    U    C   A        g  auu 
 cc   cuuu ccuag UCCC GAGA CCU ACUUGUGA gu   u
 ||   |||| ||||| |||| |||| ||| |||||||| ||   u
 gg   gagg ggauc aggg uucu gga ugaacacu ca   a
a  --g    c     c    -    c   c        a  aug 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr21: 16302280-16302368 [+]

Mature ppy-miR-125b

• Accession: MIMAT0002223
• Description: Pongo pygmaeus ppy-miR-125b mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24