Stem-loop ppa-mir-136

Accession

MI0002596

Description

Pan paniscus ppa-mir-136 precursor miRNA

Sequence

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuaugcuccaucaucgucucaaaugagucuucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 100816220-100816301 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppa-mir-136

Mature ppa-miR-136

• Accession: MIMAT0002295
• Description: Pan paniscus ppa-miR-136 mature miRNA
• Sequence: 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24