Stem-loop ptr-mir-154

Accession

MI0002597

Description

Pan troglodytes ptr-mir-154 precursor miRNA

Literature search

4 open access papers mention ptr-mir-154
(9 sentences)

Sequence

609 reads, 5.0 reads per million, 22 experiments

gugguacuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauuugugacgAAUCAUACACGGUUGACCUAUUUuucaguaccaa
.(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).))))))).

Structure

g       u            U      -  --C U    uu 
 ugguacu gaagaUAGGUUA CCGUGU UG   C UCGc  u
 ||||||| |||||||||||| |||||| ||   | ||||  a
 accauga uuUUUAUCCAGU GGCACA AC   g agug  u
a       c            U      U  UAA c    uu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 86308003-86308086 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from ptr-mir-154

Mature ptr-miR-154-5p

• Accession: MIMAT0002296
• Description: Pan troglodytes ptr-miR-154-5p mature miRNA
• Sequence: 15 - UAGGUUAUCCGUGUUGCCUUCG - 36
• Evidence: not_experimental

Mature ptr-miR-154-3p

• Accession: MIMAT0052203
• Description: Pan troglodytes ptr-miR-154-3p mature miRNA
• Sequence: 51 - AAUCAUACACGGUUGACCUAUUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24