miRBase entry: ptr-mir-154

Stem-loop ptr-mir-154


Accession
MI0002597
Description
Pan troglodytes ptr-mir-154 precursor miRNA

Literature search
1 open access papers mention ptr-mir-154
(1 sentences)

Sequence


gugguacuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauuugugacgaaucauacacgguugaccuauuuuucaguaccaa
.(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).))))))).

Structure
g       u            U      -  --C U    uu 
 ugguacu gaagaUAGGUUA CCGUGU UG   C UCGc  u
 ||||||| |||||||||||| |||||| ||   | ||||  a
 accauga uuuuuauccagu ggcaca ac   g agug  u
a       c            u      u  uaa c    uu 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr14: 86308003-86308086 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ptr-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-154

Accession MIMAT0002296
Description Pan troglodytes ptr-miR-154 mature miRNA
Sequence 15 - UAGGUUAUCCGUGUUGCCUUCG - 36
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24