Stem-loop mml-mir-190a

Accession

MI0002613

Description

Macaca mulatta mml-mir-190a precursor miRNA

Sequence

14507 reads, 106 reads per million, 8 experiments

ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaaCUAUAUAUCAAACAUAUUCCUacagugucuugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure

u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cguuc g gacaU  UUAUACAAACUAUAUA  UCaac    u
c     u u     CC                --     cuaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 39416819-39416903 [+]

Mature mml-miR-190a-5p

• Accession: MIMAT0002312
• Description: Macaca mulatta mml-miR-190a-5p mature miRNA
• Sequence: 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
• Evidence: experimental ; Illumina [2]

Mature mml-miR-190a-3p

• Accession: MIMAT0026572
• Description: Macaca mulatta mml-miR-190a-3p mature miRNA
• Sequence: 52 - CUAUAUAUCAAACAUAUUCCU - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45