Stem-loop ptr-mir-21

Accession

MI0002622

Description

Pan troglodytes ptr-mir-21 precursor miRNA

Literature search

30 open access papers mention ptr-mir-21
(218 sentences)

Sequence

283034 reads, 2353.0 reads per million, 24 experiments

ugucgggUAGCUUAUCAGACUGAUGUUGAcuguugaaucucauggCAACACCAGUCGAUGGGCUGUcugaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure

                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG cugu ga  
|||||||||||||||| ||||| ||||| |||| || u
acagucUGUCGGGUAG CUGAC ACAAC ggua cu  
                -     C     -    -  c 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr17: 59181943-59182014 [+]

Mature ptr-miR-21-5p

• Accession: MIMAT0002321
• Description: Pan troglodytes ptr-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGAUGUUGA - 29
• Evidence: not_experimental

Mature ptr-miR-21-3p

• Accession: MIMAT0052205
• Description: Pan troglodytes ptr-miR-21-3p mature miRNA
• Sequence: 46 - CAACACCAGUCGAUGGGCUGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24