Stem-loop ggo-mir-21

Accession

MI0002623

Description

Gorilla gorilla ggo-mir-21 precursor miRNA

Literature search

4 open access papers mention ggo-mir-21
(56 sentences)

Sequence

75673 reads, 4651.0 reads per million, 4 experiments

ugucgggUAGCUUAUCAGACUGAUGUUGAcuguugaaucucauggCAACACCAGUCGAUGGGCUGUcugaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure

                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG cugu ga  
|||||||||||||||| ||||| ||||| |||| || u
acagucUGUCGGGUAG CUGAC ACAAC ggua cu  
                -     C     -    -  c 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 23505237-23505308 [-]

Mature ggo-miR-21-5p

• Accession: MIMAT0002322
• Description: Gorilla gorilla ggo-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGAUGUUGA - 29
• Evidence: not_experimental

Mature ggo-miR-21-3p

• Accession: MIMAT0061249
• Description: Gorilla gorilla ggo-miR-21-3p mature miRNA
• Sequence: 46 - CAACACCAGUCGAUGGGCUGU - 66
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24