Stem-loop ptr-mir-22

Accession

MI0002633

Description

Pan troglodytes ptr-mir-22 precursor miRNA

Literature search

2 open access papers mention ptr-mir-22
(4 sentences)

Sequence

69919 reads, 610.0 reads per million, 24 experiments

ggcugagccgcaguAGUUCUUCAGUGGCAAGCUUUauguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUUgcccucugcc
(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))

Structure

   u   cc               -     A      u  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUa gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cgUUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr17: 1708687-1708771 [-]

Mature ptr-miR-22-5p

• Accession: MIMAT0052206
• Description: Pan troglodytes ptr-miR-22-5p mature miRNA
• Sequence: 15 - AGUUCUUCAGUGGCAAGCUUU - 35
• Evidence: not_experimental

Mature ptr-miR-22-3p

• Accession: MIMAT0002332
• Description: Pan troglodytes ptr-miR-22-3p mature miRNA
• Sequence: 53 - AAGCUGCCAGUUGAAGAACUGUU - 75
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24