Stem-loop ggo-mir-28

Accession

MI0002651

Description

Gorilla gorilla ggo-mir-28 precursor miRNA

Sequence

1687 reads, 105.0 reads per million, 4 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuuaccuuucugacuuuccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.(((((((......)))))....)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucagu  u
   c         G                C  ccuu     cu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 191957216-191957301 [+]

Mature ggo-miR-28-5p

• Accession: MIMAT0002354
• Description: Gorilla gorilla ggo-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: experimental ; Illumina [2]

Mature ggo-miR-28-3p

• Accession: MIMAT0061250
• Description: Gorilla gorilla ggo-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116