Stem-loop ggo-mir-29a

Accession

MI0002657

Description

Gorilla gorilla ggo-mir-29a precursor miRNA

Literature search

1 open access papers mention ggo-mir-29a
(1 sentences)

Sequence

130986 reads, 9385.0 reads per million, 4 experiments

augACUGAUUUCUUUUGGUGUUCAGagucaauauaauuuucUAGCACCAUCUGAAAUCGGUUAu
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure

            UUU       C    ucaa 
augACUGAUUUC   UGGUGUU AGag    u
||||||||||||   ||||||| ||||    a
uAUUGGCUAAAG   ACCACGA Ucuu    u
            UCU       -    uuaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 130188804-130188867 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-29a

Mature ggo-miR-29a-5p

• Accession: MIMAT0061251
• Description: Gorilla gorilla ggo-miR-29a-5p mature miRNA
• Sequence: 4 - ACUGAUUUCUUUUGGUGUUCAG - 25
• Evidence: experimental

Mature ggo-miR-29a-3p

• Accession: MIMAT0002360
• Description: Gorilla gorilla ggo-miR-29a-3p mature miRNA
• Sequence: 42 - UAGCACCAUCUGAAAUCGGUUA - 63
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24