miRBase entry: ptr-mir-30a

Stem-loop ptr-mir-30a


Accession
MI0002667
Description
Pan troglodytes ptr-mir-30a precursor miRNA

Literature search
1 open access papers mention ptr-mir-30a
(1 sentences)

Sequence

gcgacUGUAAACAUCCUCGACUGGAAGcugugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGCugc
(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).)))

Structure
   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr6: 74057306-74057376 [-]

Database links

Mature ptr-miR-30a-5p

Accession MIMAT0002371
Description Pan troglodytes ptr-miR-30a-5p mature miRNA
Sequence 6 - UGUAAACAUCCUCGACUGGAAG - 27
Evidence not_experimental

Mature ptr-miR-30a-3p

Accession MIMAT0002372
Description Pan troglodytes ptr-miR-30a-3p mature miRNA
Sequence 47 - CUUUCAGUCGGAUGUUUGCAGC - 68
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24