Stem-loop ptr-mir-30a

Accession

MI0002667

Description

Pan troglodytes ptr-mir-30a precursor miRNA

Literature search

1 open access papers mention ptr-mir-30a
(1 sentences)

Sequence

gcgacUGUAAACAUCCUCGACUGGAAGcugugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGCugc
(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).)))

Structure

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 74057306-74057376 [-]

Mature ptr-miR-30a-5p

• Accession: MIMAT0002371
• Description: Pan troglodytes ptr-miR-30a-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCUCGACUGGAAG - 27
• Evidence: not_experimental

Mature ptr-miR-30a-3p

• Accession: MIMAT0002372
• Description: Pan troglodytes ptr-miR-30a-3p mature miRNA
• Sequence: 47 - CUUUCAGUCGGAUGUUUGCAGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24