Stem-loop ptr-mir-30a

Accession

MI0002667

Description

Pan troglodytes ptr-mir-30a precursor miRNA

Literature search

4 open access papers mention ptr-mir-30a
(6 sentences)

Sequence

386655 reads, 3089.0 reads per million, 24 experiments

gcgacUGUAAACAUCCUCGACUGGAAGCUgugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGcugc
(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).)))

Structure

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGCU     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   c            --           guaga   c 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 74057306-74057376 [-]

Mature ptr-miR-30a-5p

• Accession: MIMAT0002371
• Description: Pan troglodytes ptr-miR-30a-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCUCGACUGGAAGCU - 29
• Evidence: not_experimental

Mature ptr-miR-30a-3p

• Accession: MIMAT0002372
• Description: Pan troglodytes ptr-miR-30a-3p mature miRNA
• Sequence: 47 - CUUUCAGUCGGAUGUUUGCAG - 67
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24