Stem-loop mml-mir-31

Accession

MI0002671

Description

Macaca mulatta mml-mir-31 precursor miRNA

Literature search

9 open access papers mention mml-mir-31
(16 sentences)

Sequence

74020 reads, 223.0 reads per million, 139 experiments

ggagaggAGGCAAGAUGCUGGCAUAGCUGUUGaacugggaaccUGCUAUGCCAACAUAUUGCCAUCUuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure

       A     G   C         -U   Gaa 
ggagagg GGCAA AUG UGGCAUAGC  GUU   c
||||||| ||||| ||| |||||||||  |||    
ccuuUCU CCGUU UAC ACCGUAUCG  caa   u
       A     A   A         Uc   ggg 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

15: 62158644-62158714 [+]

Mature mml-miR-31-5p

• Accession: MIMAT0002379
• Description: Macaca mulatta mml-miR-31-5p mature miRNA
• Sequence: 8 - AGGCAAGAUGCUGGCAUAGCUGUUG - 32
• Evidence: experimental ; Illumina [2]

Mature mml-miR-31-3p

• Accession: MIMAT0026577
• Description: Macaca mulatta mml-miR-31-3p mature miRNA
• Sequence: 44 - UGCUAUGCCAACAUAUUGCCAUCU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45