Stem-loop ptr-mir-32

Accession

MI0002678

Description

Pan troglodytes ptr-mir-32 precursor miRNA

Sequence

465 reads, 5.0 reads per million, 24 experiments

ggagaUAUUGCACAUUACUAAGUUGCAUguugucacggccucaaugCAAUUUAGUGUGUGUGAUAUUUuc
(((((((((((((((.(((((((((((((..((....))..).)))))))))))))))))))))))))))

Structure

               U            - uu  c 
ggagaUAUUGCACAU ACUAAGUUGCAU g  gu a
||||||||||||||| |||||||||||| |  ||  
cuUUUAUAGUGUGUG UGAUUUAACgua c  cg c
               -            a uc  g 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 86918371-86918440 [-]

Mature ptr-miR-32-5p

• Accession: MIMAT0002386
• Description: Pan troglodytes ptr-miR-32-5p mature miRNA
• Sequence: 6 - UAUUGCACAUUACUAAGUUGCAU - 28
• Evidence: not_experimental

Mature ptr-miR-32-3p

• Accession: MIMAT0052210
• Description: Pan troglodytes ptr-miR-32-3p mature miRNA
• Sequence: 47 - CAAUUUAGUGUGUGUGAUAUUU - 68
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24