Stem-loop ppy-mir-32

Accession

MI0002680

Description

Pongo pygmaeus ppy-mir-32 precursor miRNA

Sequence

ggagaUAUUGCACAUUACUAAGUUGCauguugucacggccucaaugcaauuuagugugugugauauuuuc
(((((((((((((((.(((((((((((((..((....))..).)))))))))))))))))))))))))))

Structure

               U            - uu  c 
ggagaUAUUGCACAU ACUAAGUUGCau g  gu a
||||||||||||||| |||||||||||| |  ||  
cuuuuauagugugug ugauuuaacgua c  cg c
               -            a uc  g 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 105405856-105405925 [-]

Mature ppy-miR-32

• Accession: MIMAT0002388
• Description: Pongo pygmaeus ppy-miR-32 mature miRNA
• Sequence: 6 - UAUUGCACAUUACUAAGUUGC - 26
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24