miRBase entry: ppy-mir-33a

Stem-loop ppy-mir-33a


Accession
MI0002687
Description
Pongo pygmaeus ppy-mir-33a precursor miRNA


Sequence


cugcgGUGCAUUGUAGUUGCAUUGcauguucuggugguacccaugcaauguuuccacagugcaucacag
(((.((((((((((.(..((((((((((....(((...)))))))))))))..).)))))))))).)))

Structure
   c          A UU          uucu   g 
cug gGUGCAUUGU G  GCAUUGcaug    ggu  
||| |||||||||| |  ||||||||||    ||| g
gac cuacgugaca c  uguaacguac    cca  
   a          c uu          ----   u 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr22: 37169637-37169705 [+]

Database links

Mature ppy-miR-33a

Accession MIMAT0002395
Description Pongo pygmaeus ppy-miR-33a mature miRNA
Sequence 6 - GUGCAUUGUAGUUGCAUUG - 24
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24