Stem-loop ptr-mir-95

Accession

MI0002690

Description

Pan troglodytes ptr-mir-95 precursor miRNA

Literature search

1 open access papers mention ptr-mir-95
(1 sentences)

Sequence

5168 reads, 38.0 reads per million, 24 experiments

aacacagugggcacUCAAUAAAUGUCUGUUGAAUUgaaaugcguuacaUUCAACGGGUAUUUAUUGAGCAcccacucugug
.(((.((((((..((((((((((((((((((((((((......))).)))))))))))))))))))))..)))))).))).

Structure

a   c      ca                     -   aa 
 aca aguggg  cUCAAUAAAUGUCUGUUGAAU Uga  u
 ||| ||||||  ||||||||||||||||||||| |||   
 ugu ucaccc  GAGUUAUUUAUGGGCAACUUa auu  g
g   c      AC                     c   gc 

Annotation confidence Medium

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr4: 8500831-8500911 [-]

Mature ptr-miR-95-5p

• Accession: MIMAT0052212
• Description: Pan troglodytes ptr-miR-95-5p mature miRNA
• Sequence: 15 - UCAAUAAAUGUCUGUUGAAUU - 35
• Evidence: not_experimental

Mature ptr-miR-95-3p

• Accession: MIMAT0002398
• Description: Pan troglodytes ptr-miR-95-3p mature miRNA
• Sequence: 49 - UUCAACGGGUAUUUAUUGAGCA - 70
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24