Stem-loop ppy-mir-95

Accession

MI0002692

Description

Pongo pygmaeus ppy-mir-95 precursor miRNA

Sequence

aacacagugggcacucaauaaaugucuguugaauugaaaugcguuacaUUCAACGGGUAUUUAUUGAGCAcccacucugug
.(((.((((((..((((((((((((((((((((((((......))).)))))))))))))))))))))..)))))).))).

Structure

a   c      ca                     -   aa 
 aca aguggg  cucaauaaaugucuguugaau uga  u
 ||| ||||||  ||||||||||||||||||||| |||   
 ugu ucaccc  GAGUUAUUUAUGGGCAACUUa auu  g
g   c      AC                     c   gc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr4: 5076923-5077003 [+]

Mature ppy-miR-95

• Accession: MIMAT0002400
• Description: Pongo pygmaeus ppy-miR-95 mature miRNA
• Sequence: 49 - UUCAACGGGUAUUUAUUGAGCA - 70
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24