Stem-loop ptr-mir-98

Accession

MI0002697

Description

Pan troglodytes ptr-mir-98 precursor miRNA

Literature search

2 open access papers mention ptr-mir-98
(3 sentences)

Sequence

28139 reads, 224.0 reads per million, 24 experiments

aggauucugcucaugccagggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaaCUAUACAACUUACUACUUUCCcugguguguggcauauuca
.((((..((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).)))).)))).

Structure

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg guguggucCC UUUCAUCAUUCAACAUA Caau         accccg    a
a    -u    u          -                 U    agaagauua      gauu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 53203082-53203200 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-98

Mature ptr-miR-98-5p

• Accession: MIMAT0002405
• Description: Pan troglodytes ptr-miR-98-5p mature miRNA
• Sequence: 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
• Evidence: not_experimental

Mature ptr-miR-98-3p

• Accession: MIMAT0052213
• Description: Pan troglodytes ptr-miR-98-3p mature miRNA
• Sequence: 80 - CUAUACAACUUACUACUUUCC - 100
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24