Stem-loop ggo-mir-98

Accession

MI0002698

Description

Gorilla gorilla ggo-mir-98 precursor miRNA

Literature search

1 open access papers mention ggo-mir-98
(2 sentences)

Sequence

6226 reads, 497.0 reads per million, 4 experiments

gUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauAACUAUACAACUUACUACuuucc
..(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))..

Structure

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuuCAUCAUUCAACAUA CAAu         accccg    a
cc                 U    agaagauua      gauu 

Annotation confidence Medium

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 54146004-54146083 [-]

Mature ggo-miR-98-5p

• Accession: MIMAT0002406
• Description: Gorilla gorilla ggo-miR-98-5p mature miRNA
• Sequence: 2 - UGAGGUAGUAAGUUGUAUUGUU - 23
• Evidence: not_experimental

Mature ggo-miR-98-3p

• Accession: MIMAT0061254
• Description: Gorilla gorilla ggo-miR-98-3p mature miRNA
• Sequence: 58 - AACUAUACAACUUACUAC - 75
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24