miRBase entry: ppy-mir-98

Stem-loop ppy-mir-98

Accession

MI0002699

Description

Pongo pygmaeus ppy-mir-98 precursor miRNA

Sequence

gUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaacuauacaacuuacuacuuucc
..(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))..

Structure

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 53953964-53954043 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-98

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-98

Accession	MIMAT0002407
Description	Pongo pygmaeus ppy-miR-98 mature miRNA
Sequence	2 - UGAGGUAGUAAGUUGUAUUGUU - 23
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24