Stem-loop ppa-mir-98

Accession

MI0002701

Description

Pan paniscus ppa-mir-98 precursor miRNA

Sequence

gUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaacuauacaacuuacuacuuucc
..(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))..

Structure

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  uuucaucauucaacaua caau         accccg    a
cc                 u    agaagauua      gauu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 53878637-53878716 [-]

Mature ppa-miR-98

• Accession: MIMAT0002409
• Description: Pan paniscus ppa-miR-98 mature miRNA
• Sequence: 2 - UGAGGUAGUAAGUUGUAUUGUU - 23
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24