Stem-loop mml-mir-100

Accession

MI0002714

Description

Macaca mulatta mml-mir-100 precursor miRNA

Literature search

1 open access papers mention mml-mir-100
(2 sentences)

Sequence

991610 reads, 7560 reads per million, 8 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUGguauuaguccgcacAAGCUUGUGUCUAUAGGUAUGugucuuuuagg
((((....((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).....))))

Structure

    -uugc    A   C      C   A      guau 
ccug     caca ACC GUAGAU CGA CUUGUG    u
||||     |||| ||| |||||| ||| ||||||    a
ggau     guGU UGG UAUCUG GUU GAAcac    g
    uuucu    A   A      U   C      gccu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [2]. The expression of this mature miRNA was validated by Miska et al [1].

Genome context

chr14: 115006675-115006754 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-100

Mature mml-miR-100-5p

• Accession: MIMAT0002422
• Description: Macaca mulatta mml-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGUG - 34
• Evidence: experimental ; cloned [1], Illumina [3]

Mature mml-miR-100-3p

• Accession: MIMAT0026580
• Description: Macaca mulatta mml-miR-100-3p mature miRNA
• Sequence: 49 - AAGCUUGUGUCUAUAGGUAUG - 69
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


2. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45