miRBase entry: ppy-mir-29b-1

Stem-loop ppy-mir-29b-1

Accession

MI0002726

Description

Pongo pygmaeus ppy-mir-29b-1 precursor miRNA

Sequence

cuucaggaagcugguuucauauggugguuuagauuuaaauagugauugucUAGCACCAUUUGAAAUCAGUguucuuggggg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).

Structure

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 127859566-127859646 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-29b

Accession	MIMAT0002434
Description	Pongo pygmaeus ppy-miR-29b mature miRNA
Sequence	51 - UAGCACCAUUUGAAAUCAGU - 70
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24