miRBase entry: ppy-mir-105-1

Stem-loop ppy-mir-105-1

Accession

MI0002746

Description

Pongo pygmaeus ppy-mir-105-1 precursor miRNA

Sequence

ugugcaucguggUCAAAUGCUCAGACUCCUGUGGUggcugcucaugcaccacggauguuugagcaugugcuacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUg    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 152524289-152524369 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-105-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-105

Accession	MIMAT0002450
Description	Pongo pygmaeus ppy-miR-105 mature miRNA
Sequence	13 - UCAAAUGCUCAGACUCCUGUGGU - 35
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24