Stem-loop ptr-mir-124a

Accession

MI0002765

Description

Pan troglodytes ptr-mir-124a precursor miRNA

Literature search

2 open access papers mention ptr-mir-124a
(6 sentences)

Sequence

445283 reads, 3993.0 reads per million, 20 experiments

aucaagauuagaggcucugcucucCGUGUUCACAGCGGACCUUGAUuuaaugucauacaauUAAGGCACGCGGUGAAUGCCAAgagcggagccuacggcugcacuugaa
.(((((..(((((((((((((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))))))....)))..))))).

Structure

a     au   ----            cC        A   GA        uaau 
 ucaag  uag    aggcucugcucu  GUGUUCAC GCG  CCUUGAUu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgagA  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggca            AC        G   AC        caua 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 65469871-65469979 [+]

Mature ptr-miR-124a-5p

• Accession: MIMAT0052223
• Description: Pan troglodytes ptr-miR-124a-5p mature miRNA
• Sequence: 25 - CGUGUUCACAGCGGACCUUGAU - 46
• Evidence: not_experimental

Mature ptr-miR-124a-3p

• Accession: MIMAT0002469
• Description: Pan troglodytes ptr-miR-124a-3p mature miRNA
• Sequence: 62 - UAAGGCACGCGGUGAAUGCCAA - 83
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24