miRBase entry: ppy-mir-147a

Stem-loop ppy-mir-147a

Accession

MI0002771

Description

Pongo pygmaeus ppy-mir-147a precursor miRNA

Sequence

aaucuaaagaaaacauuucugcacacacaccagacuauggaagccaGUGUGUGGAAAUGCUUCUGCuagauu
((((((.((((..(((((((((((((...(((.....)))......))))))))))))).))))..))))))

Structure

      -a    aa             ---aca   g 
aaucua  agaa  cauuucugcacac      cca a
||||||  ||||  |||||||||||||      ||| c
uuagau  UCUU  GUAAAGGUGUGUG      ggu u
      CG    -C             accgaa   a

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 117043215-117043286 [-]

Database links

Mature ppy-miR-147a

Accession	MIMAT0002475
Description	Pongo pygmaeus ppy-miR-147a mature miRNA
Sequence	47 - GUGUGUGGAAAUGCUUCUGC - 66
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24