Stem-loop ggo-mir-7-1

Accession

MI0002775

Description

Gorilla gorilla ggo-mir-7-1 precursor miRNA

Literature search

1 open access papers mention ggo-mir-7-1
(8 sentences)

Sequence

5375 reads, 541.0 reads per million, 4 experiments

uuggauguuggccuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUAuggcacaggccaugccucuacag
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))...

Structure

--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
gac    c  u      -  c        G     -       -      cu     a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 66002684-66002793 [-]

Mature ggo-miR-7-5p

• Accession: MIMAT0002479
• Description: Gorilla gorilla ggo-miR-7-5p mature miRNA
• Sequence: 24 - UGGAAGACUAGUGAUUUUGUUGUU - 47
• Evidence: not_experimental

Mature ggo-miR-7-1-3p

• Accession: MIMAT0061259
• Description: Gorilla gorilla ggo-miR-7-1-3p mature miRNA
• Sequence: 66 - CAACAAAUCACAGUCUGCCAUA - 87
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24