Stem-loop ptr-mir-7-3

Accession

MI0002785

Description

Pan troglodytes ptr-mir-7-3 precursor miRNA

Sequence

33832 reads, 271.0 reads per million, 24 experiments

agauuagaguggcuguggucuagugcugugUGGAAGACUAGUGAUUUUGUUGUUcugauguacuacgaCAACAAGUCACAGCCGGCCUCAUagcgcagacucccuucgac
......(((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))))).)))...

Structure

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUU ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgaUAC CC  C GA CACUGAA CAACag au  u
---cag   c  ----     -        U  GG C  -       -      c  ca 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 4968478-4968587 [+]

Mature ptr-miR-7-5p

• Accession: MIMAT0060776
• Description: Pan troglodytes ptr-miR-7-5p mature miRNA
• Sequence: 31 - UGGAAGACUAGUGAUUUUGUUGUU - 54
• Evidence: not_experimental

Mature ptr-miR-7-3-3p

• Accession: MIMAT0052224
• Description: Pan troglodytes ptr-miR-7-3-3p mature miRNA
• Sequence: 69 - CAACAAGUCACAGCCGGCCUCAU - 91
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24