Stem-loop ptr-mir-7-3

Accession

MI0002785

Description

Pan troglodytes ptr-mir-7-3 precursor miRNA

Sequence

agauuagaguggcuguggucuagugcugugUGGAAGACUAGUGAUUUUGUUGUucugauguacuacgacaacaagucacagccggccucauagcgcagacucccuucgac
......(((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))))).)))...

Structure

agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 4968478-4968587 [+]

Mature ptr-miR-7

• Accession: MIMAT0002485
• Description: Pan troglodytes ptr-miR-7 mature miRNA
• Sequence: 31 - UGGAAGACUAGUGAUUUUGUUGU - 53
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24