Stem-loop ggo-mir-34a

Accession

MI0002796

Description

Gorilla gorilla ggo-mir-34a precursor miRNA

Literature search

2 open access papers mention ggo-mir-34a
(8 sentences)

Sequence

1192 reads, 80.0 reads per million, 4 experiments

ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUugugagcaauaguaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacguuguggggccc
((((.(((((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..))..)))).

Structure

-    -a  --    -         uU        -   A          -guga  a 
 ggcc  gc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| |||||||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac ucgugaagA  CCGUCAUA GAA CGACUAAcga     ug u
c    gg  uu    g         UC        U   -          aggaa  a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 8834473-8834582 [-]

Mature ggo-miR-34a-5p

• Accession: MIMAT0002494
• Description: Gorilla gorilla ggo-miR-34a-5p mature miRNA
• Sequence: 22 - UGGCAGUGUCUUAGCUGGUUGU - 43
• Evidence: not_experimental

Mature ggo-miR-34a-3p

• Accession: MIMAT0061262
• Description: Gorilla gorilla ggo-miR-34a-3p mature miRNA
• Sequence: 65 - AAUCAGCAAGUAUACUGCCCUA - 86
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24