Stem-loop ptr-mir-34a

Accession

MI0002800

Description

Pan troglodytes ptr-mir-34a precursor miRNA

Literature search

13 open access papers mention ptr-mir-34a
(43 sentences)

Sequence

903 reads, 10.0 reads per million, 24 experiments

ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugagcaauaguaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacguuguggggccc
((((.(((((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..))..)))).

Structure

-    -a  --    -         uU        -   A          -guga  a 
 ggcc  gc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUU     gc a
 ||||  ||  |||| |||||||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac ucgugaagA  CCGUCAUA GAA CGACUAAcga     ug u
c    gg  uu    g         UC        U   -          aggaa  a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 8482192-8482301 [-]

Mature ptr-miR-34a-5p

• Accession: MIMAT0002498
• Description: Pan troglodytes ptr-miR-34a-5p mature miRNA
• Sequence: 22 - UGGCAGUGUCUUAGCUGGUUGUU - 44
• Evidence: not_experimental

Mature ptr-miR-34a-3p

• Accession: MIMAT0052227
• Description: Pan troglodytes ptr-miR-34a-3p mature miRNA
• Sequence: 65 - AAUCAGCAAGUAUACUGCCCUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24