miRBase entry: mml-mir-196a-1

Stem-loop mml-mir-196a-1

Accession

MI0002821

Description

Macaca mulatta mml-mir-196a-1 precursor miRNA

Literature search

2 open access papers mention mml-mir-196a-1
(2 sentences)

Sequence

162743 reads, 107.0 reads per million, 129 experiments

gugaauUAGGUAGUUUCAUGUUGUUGGGccuggguuucugaacaCAACAACAUUAAACCACCCGAUucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure

       A   A    C         - Gc ugg 
gugaauU GGU GUUU AUGUUGUUG G  c   g
||||||| ||| |||| ||||||||| |  |   u
cacuUAG CCA CAAA UACAACAAC c  g   u
       C   C    U         a aa ucu

Annotation confidence High

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

16: 48163617-48163686 [+]

Database links

Mature mml-miR-196a-1-5p

Accession	MIMAT0002519
Description	Macaca mulatta mml-miR-196a-1-5p mature miRNA
Sequence	7 - UAGGUAGUUUCAUGUUGUUGGG - 28
Evidence	experimental Illumina [2]
Database links
Predicted targets

Mature mml-miR-196a-1-3p

Accession	MIMAT0051606
Description	Macaca mulatta mml-miR-196a-1-3p mature miRNA
Sequence	45 - CAACAACAUUAAACCACCCGAU - 66
Evidence	experimental Illumina [2]

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24