miRBase entry: ggo-mir-196-1

Stem-loop ggo-mir-196-1

Accession

MI0002822

Description

Gorilla gorilla ggo-mir-196-1 precursor miRNA

Sequence

gugaauUAGGUAGUUUCAUGUUGUUGGgccuggguuucugaacacaacaacauuaaaccacccgauucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure

       A   A    C         - gc ugg 
gugaauU GGU GUUU AUGUUGUUG G  c   g
||||||| ||| |||| ||||||||| |  |   u
cacuuag cca caaa uacaacaac c  g   u
       c   c    u         a aa ucu

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 34852872-34852941 [+]

Database links

Mature ggo-miR-196

Accession	MIMAT0002520
Description	Gorilla gorilla ggo-miR-196 mature miRNA
Sequence	7 - UAGGUAGUUUCAUGUUGUUGG - 27
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24