miRBase entry: ppy-mir-196-1

Stem-loop ppy-mir-196-1

Accession

MI0002823

Description

Pongo pygmaeus ppy-mir-196-1 precursor miRNA

Sequence

gugaauUAGGUAGUUUCAUGUUGUUGGgccuggguuucugaacacaacaacauuaaaccacccgauucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure

       A   A    C         - gc ugg 
gugaauU GGU GUUU AUGUUGUUG G  c   g
||||||| ||| |||| ||||||||| |  |   u
cacuuag cca caaa uacaacaac c  g   u
       c   c    u         a aa ucu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002963091.1: 1600269-1600338 [-]

Database links

Mature ppy-miR-196

Accession	MIMAT0002521
Description	Pongo pygmaeus ppy-miR-196 mature miRNA
Sequence	7 - UAGGUAGUUUCAUGUUGUUGG - 27
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24